Gisela Pattarone

Bioinformatician & Health Data Scientist

Specialized in Pediatric Cancer Genomics & Precision Medicine

50+
Genomic Samples Analyzed
4
Analysis Modules
20+
Genes Profiled
100%
Open Source

Project Demonstrations

Watch these mini-videos showcasing the key features and capabilities of the genomic analysis pipeline.

Mutational Profile Analysis
Interactive demonstration of the mutational landscape in pediatric gliomas, highlighting variant types (SNVs, Indels, CNVs), key driver genes, and clinical correlations through dynamic data visualization.
Teal Application Walkthrough
Interactive navigation of the genomic analysis platform, demonstrating data filtering, mutation profiling, pathway exploration, and visualization of gene interaction networks.
Results Interpretation
How to interpret genomic analysis results and therapeutic recommendations from the pipeline output.
Featured Project

Pediatric Gliomas Research Pipeline

Comprehensive genomic analysis pipeline for pediatric glioma research with interactive visualization. Features SRA data processing, variant calling, mutational profiling, and therapeutic target identification with a sophisticated Teal-based Shiny application.

R Python Nextflow Teal Framework Shiny PostgreSQL Docker
Dashboard Videos View Code

SRA Data Automation

Automated pipeline for accessing and processing SRA genomic data using Nextflow workflows. Featured in Seqera's technical blog for its innovative approach to large-scale genomic data processing.

Nextflow SRA Toolkit Python BioPython FastQC
Read Article Source Code